at.mug.iqm.img.bundle.imagej

Class Image_Stabilizer_Log_Applier

java.lang.Object

at.mug.iqm.img.bundle.imagej.Image_Stabilizer_Log_Applier

All Implemented Interfaces:

ij.plugin.filter.PlugInFilter

public class Image_Stabilizer_Log_Applier
extends Object
implements ij.plugin.filter.PlugInFilter

Field Summary

Fields

Modifier and Type	Field and Description
(package private) static int	AFFINE
(package private) ij.ImagePlus	imp
(package private) String[]	log
(package private) ij.plugin.frame.Editor	logEditor
(package private) int	logLine
(package private) String	outputDir
(package private) boolean	outputNewStack
(package private) ij.ImageStack	stack
(package private) ij.ImageStack	stackOut
(package private) boolean	stackVirtual
(package private) int	transform
(package private) static int	TRANSLATION

Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_IMAGES, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Constructor Summary

Constructors

Constructor and Description
Image_Stabilizer_Log_Applier()

Method Summary

Modifier and Type	Method and Description
(package private) String	getBaseName(String fileName)
(package private) boolean	loadLogEditor()
(package private) void	process(ij.process.ImageProcessor ipRef)
void	run(ij.process.ImageProcessor ip)
(package private) void	saveImage(ij.process.ImageProcessor ip, int slice)
int	setup(String arg, ij.ImagePlus imp)
(package private) boolean	showDialog(ij.process.ImageProcessor ip)
(package private) void	showProgress(double percent)
(package private) void	warpAffine(ij.process.ImageProcessor ipOut, ij.process.ImageProcessor ip, double[][] wp)
(package private) void	warpColorAffine(ij.process.ImageProcessor ipOut, ij.process.ColorProcessor ip, double[][] wp)
(package private) void	warpColorTranslation(ij.process.ImageProcessor ipOut, ij.process.ColorProcessor ip, double[][] wp)
(package private) void	warpTranslation(ij.process.ImageProcessor ipOut, ij.process.ImageProcessor ip, double[][] wp)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

TRANSLATION

static final int TRANSLATION

See Also:

Constant Field Values

AFFINE

static final int AFFINE

See Also:

Constant Field Values

imp

ij.ImagePlus imp

stack

ij.ImageStack stack

stackOut

ij.ImageStack stackOut

outputDir

String outputDir

stackVirtual

boolean stackVirtual

outputNewStack

boolean outputNewStack

transform

int transform

log

String[] log

logEditor

ij.plugin.frame.Editor logEditor

logLine

int logLine

Constructor Detail

Image_Stabilizer_Log_Applier

public Image_Stabilizer_Log_Applier()

Method Detail

setup

public int setup(String arg,
                 ij.ImagePlus imp)

Specified by:

setup in interface ij.plugin.filter.PlugInFilter

run

public void run(ij.process.ImageProcessor ip)

Specified by:

run in interface ij.plugin.filter.PlugInFilter

showDialog

boolean showDialog(ij.process.ImageProcessor ip)

showProgress

void showProgress(double percent)

process

void process(ij.process.ImageProcessor ipRef)

saveImage

void saveImage(ij.process.ImageProcessor ip,
               int slice)

getBaseName

String getBaseName(String fileName)

warpAffine

void warpAffine(ij.process.ImageProcessor ipOut,
                ij.process.ImageProcessor ip,
                double[][] wp)

warpColorAffine

void warpColorAffine(ij.process.ImageProcessor ipOut,
                     ij.process.ColorProcessor ip,
                     double[][] wp)

warpTranslation

void warpTranslation(ij.process.ImageProcessor ipOut,
                     ij.process.ImageProcessor ip,
                     double[][] wp)

warpColorTranslation

void warpColorTranslation(ij.process.ImageProcessor ipOut,
                          ij.process.ColorProcessor ip,
                          double[][] wp)

loadLogEditor

boolean loadLogEditor()