at.mug.iqm.img.bundle.op

Class IqmOpMorph

java.lang.Object

at.mug.iqm.api.operator.AbstractOperator

at.mug.iqm.img.bundle.op.IqmOpMorph

All Implemented Interfaces:

IProgressEmitter, ICancelable, IOperator

public class IqmOpMorph
extends AbstractOperator

The Skeleton and the Fill Holes options are carried out by launching ImageJ and by using the corresponding plugins. http://rsbweb.nih.gov/ij/ erasion of blobs is carried out by using the BlobFinder class by A.Greensted http://www.labbookpages.co.uk

Since:

2009 04

Author:

Ahammer, Kainz, Kaar

Field Summary

Fields inherited from class at.mug.iqm.api.operator.AbstractOperator

isCancelable, name, parentTask, pcs, type

Constructor Summary

Constructors

Constructor and Description
IqmOpMorph()

Method Summary

Modifier and Type	Method and Description
private javax.media.jai.PlanarImage	copyBorder(javax.media.jai.PlanarImage pi, int borderX, int borderY)
private javax.media.jai.TiledImage	cropBorder(javax.media.jai.TiledImage ti, int borderX, int borderY, int originalWidth, int originalHeight)
private javax.media.jai.TiledImage	dilate(javax.media.jai.PlanarImage pi, int borderX, int borderY, int[] kernelMarginX, int[] kernelMarginY)
private javax.media.jai.TiledImage	erode(javax.media.jai.PlanarImage pi, int borderX, int borderY, int[] kernelMarginX, int[] kernelMarginY)
String	getName()
OperatorType	getType()
IResult	run(IWorkPackage wp)

Methods inherited from class at.mug.iqm.api.operator.AbstractOperator

addProgressListener, fireProgressChanged, getParentTask, getPcs, getProgressListeners, initializeOperator, isCancelable, isCancelled, setCancelable, setParentTask

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IqmOpMorph

public IqmOpMorph()

Method Detail

cropBorder

private javax.media.jai.TiledImage cropBorder(javax.media.jai.TiledImage ti,
                                              int borderX,
                                              int borderY,
                                              int originalWidth,
                                              int originalHeight)

copyBorder

private javax.media.jai.PlanarImage copyBorder(javax.media.jai.PlanarImage pi,
                                               int borderX,
                                               int borderY)

dilate

private javax.media.jai.TiledImage dilate(javax.media.jai.PlanarImage pi,
                                          int borderX,
                                          int borderY,
                                          int[] kernelMarginX,
                                          int[] kernelMarginY)

erode

private javax.media.jai.TiledImage erode(javax.media.jai.PlanarImage pi,
                                         int borderX,
                                         int borderY,
                                         int[] kernelMarginX,
                                         int[] kernelMarginY)

run

public IResult run(IWorkPackage wp)

Specified by:

run in interface IOperator

Specified by:

run in class AbstractOperator

getName

public String getName()

Specified by:

getName in interface IOperator

Specified by:

getName in class AbstractOperator

getType

public OperatorType getType()

Specified by:

getType in interface IOperator

Specified by:

getType in class AbstractOperator