Uses of Class
at.mug.iqm.api.model.IqmDataBox

Packages that use IqmDataBox

Package	Description
at.mug.iqm.api.gui
at.mug.iqm.api.model
at.mug.iqm.api.operator
at.mug.iqm.api.persistence
at.mug.iqm.api.workflow
at.mug.iqm.commons.io
at.mug.iqm.commons.util.table
at.mug.iqm.core.processing
at.mug.iqm.core.processing.loader
at.mug.iqm.core.workflow
at.mug.iqm.gui.util

Uses of IqmDataBox in at.mug.iqm.api.gui

Fields in at.mug.iqm.api.gui with type parameters of type IqmDataBox

Modifier and Type	Field and Description
private List<IqmDataBox>	MultiResultSelectorPanel.customResults
private List<IqmDataBox>	MultiResultSelectorPanel.imageResults
private List<IqmDataBox>	MultiResultSelectorPanel.plotResults
private List<IqmDataBox>	MultiResultSelectorPanel.selectedCustomResults
private List<IqmDataBox>	MultiResultSelectorPanel.selectedImageResults
private List<IqmDataBox>	MultiResultSelectorPanel.selectedPlotResults
private List<IqmDataBox>	MultiResultSelectorPanel.selectedTableResults
private List<IqmDataBox>	MultiResultSelectorPanel.tableResults

Methods in at.mug.iqm.api.gui that return types with arguments of type IqmDataBox

Modifier and Type	Method and Description
List<IqmDataBox>	MultiResultSelectorPanel.getCustomResults()
List<IqmDataBox>	MultiResultSelectorPanel.getImageResults()
List<IqmDataBox>	MultiResultSelectorPanel.getPlotResults()
List<IqmDataBox>	MultiResultSelectorPanel.getSelectedCustomResults()
List<IqmDataBox>	MultiResultSelectorPanel.getSelectedImageResults()
List<IqmDataBox>	MultiResultSelectorPanel.getSelectedPlotResults()
List<IqmDataBox>	MultiResultSelectorPanel.getSelectedTableResults()
List<IqmDataBox>	MultiResultSelectorPanel.getTableResults()

Uses of IqmDataBox in at.mug.iqm.api.model

Subclasses of IqmDataBox in at.mug.iqm.api.model

Modifier and Type	Class and Description
class	VirtualDataBox This class represents a virtual data box stored in the temporary directory

Methods in at.mug.iqm.api.model that return IqmDataBox

Modifier and Type	Method and Description
IqmDataBox	IqmDataBox.clone()

Methods in at.mug.iqm.api.model with parameters of type IqmDataBox

Modifier and Type	Method and Description
static javax.media.jai.PlanarImage	IqmDataBox.toPlanarImage(IqmDataBox iqmDataBox) This method creates a PlanarImage from the content of an IqmDataBox.

Uses of IqmDataBox in at.mug.iqm.api.operator

Fields in at.mug.iqm.api.operator with type parameters of type IqmDataBox

Modifier and Type	Field and Description
protected ArrayList<IqmDataBox>	Result.customResults
protected ArrayList<IqmDataBox>	Result.imageResults
protected ArrayList<IqmDataBox>	Result.plotResults
protected List<ArrayList<IqmDataBox>>	Result.resultRegistry
protected ArrayList<IqmDataBox>	Result.tableResults

Methods in at.mug.iqm.api.operator that return types with arguments of type IqmDataBox

Modifier and Type	Method and Description
List<ArrayList<IqmDataBox>>	Result.listAllElements() Gets the registry of the results.
List<ArrayList<IqmDataBox>>	IResult.listAllElements() Gets the registry of the results.
ArrayList<IqmDataBox>	Result.listCustomResults() Gets all custom results as IqmDataBoxes in this result object.
ArrayList<IqmDataBox>	IResult.listCustomResults() Gets all custom results as IqmDataBoxes in this result object.
ArrayList<IqmDataBox>	Result.listImageResults() Gets all image results as IqmDataBoxes in this result object.
ArrayList<IqmDataBox>	IResult.listImageResults() Gets all image results as IqmDataBoxes in this result object.
ArrayList<IqmDataBox>	Result.listPlotResults() Gets all plot results as IqmDataBoxes in this result object.
ArrayList<IqmDataBox>	IResult.listPlotResults() Gets all plot results as IqmDataBoxes in this result object.
ArrayList<IqmDataBox>	Result.listTableResults() Gets all table results as IqmDataBoxes in this result object.
ArrayList<IqmDataBox>	IResult.listTableResults() Gets all table results as IqmDataBoxes in this result object.

Methods in at.mug.iqm.api.operator with parameters of type IqmDataBox

Modifier and Type	Method and Description
void	Result.addItem(IqmDataBox item) Adds an item to the Result.
void	IResult.addItem(IqmDataBox item) Adds an item to the Result.

Constructors in at.mug.iqm.api.operator with parameters of type IqmDataBox

Constructor and Description
Result(IqmDataBox item) Creates a new Result and adds the item to the correct result list.

Uses of IqmDataBox in at.mug.iqm.api.persistence

Methods in at.mug.iqm.api.persistence that return IqmDataBox

Modifier and Type	Method and Description
IqmDataBox	VirtualDataManager.load(IVirtualizable target) Load a data item from the serialized state on the hard disk to the memory.

Methods in at.mug.iqm.api.persistence that return types with arguments of type IqmDataBox

Modifier and Type	Method and Description
List<IqmDataBox>	VirtualDataManager.save(List<IqmDataBox> list, File directory) Saves an entire list of IqmDataBoxes to the temporary directory.

Methods in at.mug.iqm.api.persistence with parameters of type IqmDataBox

Modifier and Type	Method and Description
IVirtualizable	VirtualDataManager.save(IqmDataBox target, File directory) Save a IVirtualizable object to its specified target and puts the file location to the cache.

Method parameters in at.mug.iqm.api.persistence with type arguments of type IqmDataBox

Modifier and Type	Method and Description
List<IqmDataBox>	VirtualDataManager.save(List<IqmDataBox> list, File directory) Saves an entire list of IqmDataBoxes to the temporary directory.

Uses of IqmDataBox in at.mug.iqm.api.workflow

Methods in at.mug.iqm.api.workflow that return IqmDataBox

Modifier and Type	Method and Description
IqmDataBox	ITank.getCurrentTankIqmDataBoxAt(int mgrIndex) Fetches the IqmDataBox instance at the specified index of the currently selected Tank item.
IqmDataBox	ITank.getSelectedIqmDataBox() Fetches the current IqmDataBox according to the selected item in the manager.
IqmDataBox	ITank.getTankIqmDataBoxAt(int tankIndex, int mgrIndex) Fetches the IqmDataBox instance at a specified tank and a specified manager index.

Methods in at.mug.iqm.api.workflow that return types with arguments of type IqmDataBox

Modifier and Type	Method and Description
List<IqmDataBox>	IManager.getSelectedDataBoxes() Gets a list of references to the currently selected data boxes.
List<IqmDataBox>	ITank.getTankDataAt(int index) Fetches all data boxes in a specified tank index.

Methods in at.mug.iqm.api.workflow with parameters of type IqmDataBox

Modifier and Type	Method and Description
void	ITank.addNewItem(IqmDataBox item) This method adds 1 new item to the JList.
void	ITank.addNewItemSync(IqmDataBox item) This method adds 1 new item to the JList.

Method parameters in at.mug.iqm.api.workflow with type arguments of type IqmDataBox

Modifier and Type	Method and Description
void	ITank.addNewItems(List<IqmDataBox> itemList) Add a list of IqmDataBoxes as a single item in the tank.
void	ITank.addNewItemsSync(List<IqmDataBox> itemList) Add a list of IqmDataBoxes as a single item in the tank.
void	ITank.update(List<IqmDataBox> replacement, int tankIndex) Replaces the specified tank items.

Uses of IqmDataBox in at.mug.iqm.commons.io

Fields in at.mug.iqm.commons.io with type parameters of type IqmDataBox

Modifier and Type	Field and Description
protected List<IqmDataBox>	TableFileWriter.boxes
private List<IqmDataBox>	ImageFileWriter.boxes

Constructors in at.mug.iqm.commons.io with parameters of type IqmDataBox

Constructor and Description
ImageFileWriter(File destination, IqmDataBox box, String encoding) Create a new image file writer.
TableFileWriter(File destination, IqmDataBox table, String extension) Create a new file writer object for a single table.

Constructor parameters in at.mug.iqm.commons.io with type arguments of type IqmDataBox

Constructor and Description
TableFileWriter(File destination, List<IqmDataBox> boxes, String extension, int mode) Create a new file writer object for a sequence of tables.

Uses of IqmDataBox in at.mug.iqm.commons.util.table

Method parameters in at.mug.iqm.commons.util.table with type arguments of type IqmDataBox

Modifier and Type	Method and Description
static TableModel	TableTools.mergeBoxes(List<IqmDataBox> boxList) This method merges several table models from IqmDataBoxes to a single model, if the identifier and number of columns match.

Uses of IqmDataBox in at.mug.iqm.core.processing

Fields in at.mug.iqm.core.processing with type parameters of type IqmDataBox

Modifier and Type	Field and Description
private List<ArrayList<ArrayList<IqmDataBox>>>	ExecutorServiceProcessingTask.allResultLists

Methods in at.mug.iqm.core.processing that return types with arguments of type IqmDataBox

Modifier and Type	Method and Description
private ArrayList<ArrayList<IqmDataBox>>	ExecutorServiceProcessingTask.addResultsToList(Result singleResult, ArrayList<ArrayList<IqmDataBox>> resultList, File virtDir) A helper method for filling the final result list from an operator and for optional writing of the processed items to the hard disk.
private List<ArrayList<IqmDataBox>>	SerialProcessingTask.addResultsToList(Result singleResult, List<ArrayList<IqmDataBox>> resultList) A helper method for filling the final result list from an operator and for optional writing of the processed items to the hard disk.
protected List<ArrayList<IqmDataBox>>	SerialProcessingTask.doInBackground()
protected List<ArrayList<IqmDataBox>>	ExecutorServiceProcessingTask.doInBackground()
protected List<IqmDataBox>	CreateCopiesTask.doInBackground()
private List<ArrayList<IqmDataBox>>	SerialProcessingTask.executeDefaultRoutine() This method executes the operator of this task on each element separately.
private List<ArrayList<ArrayList<IqmDataBox>>>	ExecutorServiceProcessingTask.executeDefaultRoutine() This method executes the operator of this task on each element separately.
private List<ArrayList<IqmDataBox>>	SerialProcessingTask.executeMultiStackEvenRoutine() This method executes the operator of this task in a serial manner across two parallel item stacks of the same size.
private List<ArrayList<ArrayList<IqmDataBox>>>	ExecutorServiceProcessingTask.executeMultiStackEvenRoutine() This method executes the operator of this task in a serial manner across two parallel item stacks of the same size.
private List<ArrayList<IqmDataBox>>	SerialProcessingTask.executeMultiStackOddRoutine() This method executes the operator of this task in a serial manner across one item stack and a single item.
private List<ArrayList<ArrayList<IqmDataBox>>>	ExecutorServiceProcessingTask.executeMultiStackOddRoutine() This method executes the operator of this task in a serial manner across one item stack and a single item.
private List<ArrayList<IqmDataBox>>	SerialProcessingTask.executeSingleStackSequentialRoutine() This method executes the operator of this task in a serial manner within a single stack.
protected List<ArrayList<IqmDataBox>>	ExecutorServiceProcessingTask.mergeResults(List<ArrayList<ArrayList<IqmDataBox>>> allResults) Merge all results to a list of 4 ArrayLists.
List<ArrayList<IqmDataBox>>	SerialProcessingTask.processExplicit()
List<ArrayList<IqmDataBox>>	ExecutorServiceProcessingTask.processExplicit()

Method parameters in at.mug.iqm.core.processing with type arguments of type IqmDataBox

Modifier and Type	Method and Description
private ArrayList<ArrayList<IqmDataBox>>	ExecutorServiceProcessingTask.addResultsToList(Result singleResult, ArrayList<ArrayList<IqmDataBox>> resultList, File virtDir) A helper method for filling the final result list from an operator and for optional writing of the processed items to the hard disk.
private List<ArrayList<IqmDataBox>>	SerialProcessingTask.addResultsToList(Result singleResult, List<ArrayList<IqmDataBox>> resultList) A helper method for filling the final result list from an operator and for optional writing of the processed items to the hard disk.
protected List<ArrayList<IqmDataBox>>	ExecutorServiceProcessingTask.mergeResults(List<ArrayList<ArrayList<IqmDataBox>>> allResults) Merge all results to a list of 4 ArrayLists.

Uses of IqmDataBox in at.mug.iqm.core.processing.loader

Fields in at.mug.iqm.core.processing.loader with type parameters of type IqmDataBox

Modifier and Type	Field and Description
protected List<IqmDataBox>	TankItemLoader.list The list to load.

Methods in at.mug.iqm.core.processing.loader that return types with arguments of type IqmDataBox

Modifier and Type	Method and Description
protected List<IqmDataBox>	TankItemLoader.addNewItems(List<IqmDataBox> list, boolean isVirtual, File virtDir) This method adds 1...n new items to the JList.
protected List<IqmDataBox>	TankItemLoader.doInBackground()
protected List<IqmDataBox>	ImageDataBoxLoader.doInBackground()
List<IqmDataBox>	ImageDataBoxLoader.getBoxListForHD(File[] fileList) This method reads each image (stack) from a given list of files and stores them not in memory but as a file in the temporary directory of IQM.
List<IqmDataBox>	ImageDataBoxLoader.getBoxListForMemory(File[] fileList) Adds each image in the specified file list to a list of IqmDataBox in memory.
List<IqmDataBox>	TankItemLoader.getList()

Method parameters in at.mug.iqm.core.processing.loader with type arguments of type IqmDataBox

Modifier and Type	Method and Description
protected List<IqmDataBox>	TankItemLoader.addNewItems(List<IqmDataBox> list, boolean isVirtual, File virtDir) This method adds 1...n new items to the JList.
void	TankItemLoader.setList(List<IqmDataBox> list)
protected void	TankItemLoader.setTankAndManager(List<IqmDataBox> listNew) Set the Tank and Manager.

Constructor parameters in at.mug.iqm.core.processing.loader with type arguments of type IqmDataBox

Constructor and Description
SynchronousTankItemLoader(List<IqmDataBox> list, boolean replaceItem, int replaceIndex) The constructor.
TankItemLoader(List<IqmDataBox> list, boolean replaceItem, int replaceIndex) The constructor.

Uses of IqmDataBox in at.mug.iqm.core.workflow

Methods in at.mug.iqm.core.workflow that return IqmDataBox

Modifier and Type	Method and Description
IqmDataBox	Tank.getCurrentTankIqmDataBoxAt(int mgrIndex) This method gets the IqmDataBox at the index mgrIndex of the currently selected tank list cell.
IqmDataBox	Tank.getSelectedIqmDataBox() This method gets the IqmDataBox, which according to the selected index in the current manager list, at the index of the currently selected tank list cell.
IqmDataBox	Tank.getTankIqmDataBoxAt(int tankIndex, int mgrIndex) This method gets the IqmDataBox with the imgIndex at the index tankIndex (which is a cell) of the tank model.

Methods in at.mug.iqm.core.workflow that return types with arguments of type IqmDataBox

Modifier and Type	Method and Description
List<IqmDataBox>	Manager.getSelectedDataBoxes()
List<IqmDataBox>	Tank.getTankDataAt(int index) Gets the entire item stack at a specified index in the tank list.
protected List<ArrayList<IqmDataBox>>	ResultVisualizer.mergeResults(List<ArrayList<ArrayList<IqmDataBox>>> allResults) Merge all results to a list of 4 ArrayLists.

Methods in at.mug.iqm.core.workflow with parameters of type IqmDataBox

Modifier and Type	Method and Description
void	Tank.addNewItem(IqmDataBox item)
void	Tank.addNewItemSync(IqmDataBox item)

Method parameters in at.mug.iqm.core.workflow with type arguments of type IqmDataBox

Modifier and Type	Method and Description
void	ResultVisualizer.add2DResultListToTank(List<ArrayList<IqmDataBox>> items) This method adds a List of of ArrayLists of IqmDataBoxes to the TankPanel.
void	ResultVisualizer.add3DResultListToTank(List<ArrayList<ArrayList<IqmDataBox>>> items) This method adds a List of ArrayLists of ArrayLists of IqmDataBoxes to the TankPanel.
void	Tank.addNewItems(List<IqmDataBox> itemList) This method adds 1...n new items to the JList.
void	Tank.addNewItemsSync(List<IqmDataBox> itemList)
void	ResultVisualizer.addResultsToTank(List<IqmDataBox> items) This method adds a List of IqmDataBoxes to the TankPanel.
protected List<ArrayList<IqmDataBox>>	ResultVisualizer.mergeResults(List<ArrayList<ArrayList<IqmDataBox>>> allResults) Merge all results to a list of 4 ArrayLists.
void	Tank.update(List<IqmDataBox> replacements, int tankIndex)

Uses of IqmDataBox in at.mug.iqm.gui.util

Method parameters in at.mug.iqm.gui.util with type arguments of type IqmDataBox

Modifier and Type	Method and Description
static void	GUITools.displayJoinedTables(List<IqmDataBox> boxList) This method displays joined rows in a JTable.