at.mug.iqm.commons.gui

Class SVSImageExtractorOpenDialog

java.lang.Object

java.lang.Thread

at.mug.iqm.commons.gui.SVSImageExtractorOpenDialog

All Implemented Interfaces:

Runnable

public class SVSImageExtractorOpenDialog
extends Thread

This class is responsible for opening an Aperio SVS file, showing information about its image pyramid and selecting images to be extracted into defined image formats. For jpeg2000 compressed svs files the loci-tools package is used. See Bio-Formats http://www.loci.wisc.edu/software/bio-formats

Changes

• 2010 01 Aperio jpeg2000 33005 compression
• 2010 05 registering tiff reader if reader is not available through native imagio

Since:

2009 09

Author:

Philipp Kainz

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Thread.State, Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field and Description
private File	currImgDir
private static org.apache.log4j.Logger	logger

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor and Description
SVSImageExtractorOpenDialog() Standard constructor.

Method Summary

Modifier and Type	Method and Description
void	run() Runs the dialog.

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

logger

private static final org.apache.log4j.Logger logger

currImgDir

private File currImgDir

Constructor Detail

SVSImageExtractorOpenDialog

public SVSImageExtractorOpenDialog()

Standard constructor.

Method Detail

run

public void run()

Runs the dialog.

Specified by:

run in interface Runnable

Overrides:

run in class Thread