at.mug.iqm.img.bundle.op

Class IqmOpMorph

java.lang.Object

at.mug.iqm.api.operator.AbstractOperator

at.mug.iqm.img.bundle.op.IqmOpMorph

All Implemented Interfaces:

IProgressEmitter, ICancelable, IOperator

public class IqmOpMorph
extends AbstractOperator

The Skeleton and the Fill Holes options are carried out by launching ImageJ and by using the corresponding plugins. http://rsbweb.nih.gov/ij/ erasion of blobs is carried out by using the BlobFinder class by A.Greensted http://www.labbookpages.co.uk

Since:

2009 04

Author:

Ahammer, Kainz, Kaar

Field Summary

Fields inherited from class at.mug.iqm.api.operator.AbstractOperator

isCancelable, name, parentTask, pcs, type

Constructor Summary

Constructors

Constructor and Description
IqmOpMorph()

Method Summary

Modifier and Type	Method and Description
private javax.media.jai.PlanarImage	copyBorder(javax.media.jai.PlanarImage pi, int borderX, int borderY)
private javax.media.jai.TiledImage	cropBorder(javax.media.jai.TiledImage ti, int borderX, int borderY, int originalWidth, int originalHeight)
private javax.media.jai.TiledImage	dilate(javax.media.jai.PlanarImage pi, int borderX, int borderY, int[] kernelMarginX, int[] kernelMarginY)
private javax.media.jai.TiledImage	erode(javax.media.jai.PlanarImage pi, int borderX, int borderY, int[] kernelMarginX, int[] kernelMarginY)
String	getName() Gets the unique name of the IOperator by returning the "GlobalName" element from the resources[][] of the associated IOperatorDescriptor.
OperatorType	getType() Gets the type of the operator listed in an enumeration.
IResult	run(IWorkPackage wp) This method contains the entire logic (algorithm) of the operator.

Methods inherited from class at.mug.iqm.api.operator.AbstractOperator

addProgressListener, fireProgressChanged, getParentTask, getPcs, getProgressListeners, initializeOperator, isCancelable, isCancelled, setCancelable, setParentTask

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IqmOpMorph

public IqmOpMorph()

Method Detail

cropBorder

private javax.media.jai.TiledImage cropBorder(javax.media.jai.TiledImage ti,
                                              int borderX,
                                              int borderY,
                                              int originalWidth,
                                              int originalHeight)

copyBorder

private javax.media.jai.PlanarImage copyBorder(javax.media.jai.PlanarImage pi,
                                               int borderX,
                                               int borderY)

dilate

private javax.media.jai.TiledImage dilate(javax.media.jai.PlanarImage pi,
                                          int borderX,
                                          int borderY,
                                          int[] kernelMarginX,
                                          int[] kernelMarginY)

erode

private javax.media.jai.TiledImage erode(javax.media.jai.PlanarImage pi,
                                         int borderX,
                                         int borderY,
                                         int[] kernelMarginX,
                                         int[] kernelMarginY)

run

public IResult run(IWorkPackage wp)

Description copied from interface: IOperator

This method contains the entire logic (algorithm) of the operator. An IOperator does not declare any class members, since the execution of this code must be thread-safe.

Specified by:

run in interface IOperator

Specified by:

run in class AbstractOperator

Parameters:

wp - the parameters and sources

Returns:

a IResult containing all processed data

getName

public String getName()

Description copied from interface: IOperator

Gets the unique name of the IOperator by returning the "GlobalName" element from the resources[][] of the associated IOperatorDescriptor.

Specified by:

getName in interface IOperator

Specified by:

getName in class AbstractOperator

Returns:

the unique name of the operator

getType

public OperatorType getType()

Description copied from interface: IOperator

Gets the type of the operator listed in an enumeration.

Specified by:

getType in interface IOperator

Specified by:

getType in class AbstractOperator

Returns:

the OperatorType